Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015939098.1_cds_XP_016483789.1_74871
CDS Infomation

[gene=LOC107804415] [db_xref=GeneID:107804415] [protein=polygalacturonase-like] [protein_id=XP_016483789.1] [location=join(53947..54144,54296..54424,54560..54727,54824..54856,55051..55258,55377..55458,55852..55960,56706..56822,56928..57176)] [gbkey=CDS]
Sequence

ATGTTTCTTAGAAGCCTTCTTATCTTATTACTAGCCACTTCTTTGTTTTCAACCTTTTGT
AATGGAAAGAAGATTGGAAACCCTATAAAACGTGGTAATAGTGCATCAAAAATTGTTAAT
GTGACGAAAATGCCACAAGCAATTATTGATATACAAGCTTTTGGAGCCAAGGGTGATGGA
CTCACAAATGATACAGAGGCATTTATAAAGGCTTGGAAGAAGGCATGCAAAACAGAAAAT
GCTGTGATTTTGGTGCCAAGGCACAAGATATATTATGTTGGACCAATTAAATTTCATGGT
CCTTGCAAGAAAGGCCTTAGAATGATGATAAATGGAGAACTCAGAGCTTCAAAAAACATA
TCAGATTATGAGCAAGATAAAAGACATTGGCTTTTATTCCAAAACATGGAAAACTTTACA
GTTGAAGGTGTAGGCAGCATCGATGGCAATGGAGAAGTATGGTGGAAACACTCTTGCAAA
ATTGATAAAACAATTCCATGCAATGCGAAAACACTAATAGCTCCAACTGCTATGTTCTTT
AACAATTGCACAAATGTGACAATAAGAAACTTAGAGTTGAAGAACCCACAGAAGATGCAT
TTGACAATTTCTAAAAGTGAGCATGTTGAGGTTTCAAGATTGAGACTTACAGCACCTGCT
GATAGCCCCAACACTGATGGGATTCACGTTTCTGGGACTAAAGATATAGATATTCACCAT
TGTTATATTGAAACAGGTGATGATTGTATATCAATAGTAAATGGTTCCACTAACGTTAGA
GCAAGATATATACATTGTGGACCTGGCCATGGAATCAGTATTGGAAGCTTGGGAAAAAAT
AAAGAGGAGGATGCCGTTTCAAATATTTATGTACACGATGCCACCTTGAGGGGAACAACT
AATGGATTAAGAATAAAGTCTTGGCAGGGAGGACGTGGATATGCAAAAAACATTCTTTTT
CAAGACATAGATATGGTGAATGTGACCAACCCCATAATCATAGATCAATATTACTGTGAC
CAAGAAAAACCATGCAAAGAGCAGAAAGAAGCAGTGCATGTGAGTAATATAATGTACAAA
AATATTAAGGGAACGAGTTCTACGCATACTGCAATTAAATTAAACTGCAGCAAAACTGTT
CCATGCCAAGGGATACAAATGGAAAATGTGAACATACGTTACCAAGAAGGTTCAACTGTC
AAAGCTTTATGTGCAAACGTCAAATACACAACAAAAGGGATAATTTCCCCAAAATGCCCT
TCTGAGCACCCGCTAGCATTTTTATGGAATTAA

Peptide Sequence

PEP ID

XP_016483789.1
PEP Infomation

PREDICTED: polygalacturonase-like [Nicotiana tabacum]
Sequence

MFLRSLLILLLATSLFSTFCNGKKIGNPIKRGNSASKIVNVTKMPQAIIDIQAFGAKGDG
LTNDTEAFIKAWKKACKTENAVILVPRHKIYYVGPIKFHGPCKKGLRMMINGELRASKNI
SDYEQDKRHWLLFQNMENFTVEGVGSIDGNGEVWWKHSCKIDKTIPCNAKTLIAPTAMFF
NNCTNVTIRNLELKNPQKMHLTISKSEHVEVSRLRLTAPADSPNTDGIHVSGTKDIDIHH
CYIETGDDCISIVNGSTNVRARYIHCGPGHGISIGSLGKNKEEDAVSNIYVHDATLRGTT
NGLRIKSWQGGRGYAKNILFQDIDMVNVTNPIIIDQYYCDQEKPCKEQKEAVHVSNIMYK
NIKGTSSTHTAIKLNCSKTVPCQGIQMENVNIRYQEGSTVKALCANVKYTTKGIISPKCP
SEHPLAFLWN

Transcript Sequence

Gene sequence data has not been registered.